Order from Javascripts should be necessarily changeable!
It comes sometimes to javascripts conflict.
It can only be solved with order's changing or with scriptname's changing.
I do it with scriptname, but I thing it is not the best solution.
Cool software. Keep it up! ?
You can change the order of both JS and CSS files. In the Design Panel right click on "Javascript" and select the "Include Order" option. It'll open up a dialog where you can reorder the scripts as you like (except jQuery and Bootstrap - they are included before all other scripts). Check out this tutorial.